Batch Process MRM data using MassLynx 4.1
Hi all,
I am trying to batch process MRM data collected on an Aquity LCMS system installed with MassLynx 4.1. I know batch processing of chromatograms is possible using the AutoLynx program, and that batch processing files (*.olb) can be created using OpenLynx, but I'm not sure exactly how to create a file that will execute the correct batch process.
What I the batch processed to do is to integrate all the of peaks in each MRM chromatogram from every file in the batch, then export a table of RTs and Peak Areas. Each of the runs contains multiple MRMs. Is there an easy way to achieve this?
I am trying to batch process MRM data collected on an Aquity LCMS system installed with MassLynx 4.1. I know batch processing of chromatograms is possible using the AutoLynx program, and that batch processing files (*.olb) can be created using OpenLynx, but I'm not sure exactly how to create a file that will execute the correct batch process.
What I the batch processed to do is to integrate all the of peaks in each MRM chromatogram from every file in the batch, then export a table of RTs and Peak Areas. Each of the runs contains multiple MRMs. Is there an easy way to achieve this?
0
Answers
-
This is something we are after as well, we haven't leveraged the OpenLynx and other batch correction workflows/tools you mention here. Even paid for a training session with Waters for this purpose but that was £1200+ wasted. No real solution to batch processing was provided there. Perhaps they do not see this as something a typical MassLynx users do on routine basis.samziegler said:Hi all,
I am trying to batch process MRM data collected on an Aquity LCMS system installed with MassLynx 4.1. I know batch processing of chromatograms is possible using the AutoLynx program, and that batch processing files (*.olb) can be created using OpenLynx, but I'm not sure exactly how to create a file that will execute the correct batch process.
What I the batch processed to do is to integrate all the of peaks in each MRM chromatogram from every file in the batch, then export a table of RTs and Peak Areas. Each of the runs contains multiple MRMs. Is there an easy way to achieve this?
0
